2017 (-1)
2017-01-25
№ 1. Sexually antagonistic selection and sex chromosome evolution in Stickleback.
I developed and implemented the ABC computational framework with custom C++ optimization for parameter estimation and model selection,
Changde Cheng, Andrius J. Dagilis, Jason M. Sardell, Asano Ishikawa, Jun Kitano, Matthew P. Josephson, Catherine L. Peichel, Mark Kirkpatrick.
Submission to the 2017 Society for Molecular Biology & Evolution meeting at Austin, Texas, US.
2024 (-3)
2024-11-07
№ 2. Transcriptome alteration in pancreatic neuroendocrine tumors among those living with adverse SDOH.
Andrea Gillis\(^{\ast}\), K. Kerrick Akinola\(^{\ast}\), Brendon Herring, Isra Elhussin, Elquis Castillo, Stuart Phipps, Vinodh Srinivasasainagendra, Weisheng Chen, Rachael Guenter, Tiwari Hemant, Dai Chen, Upender Manne, Herbert Chen, Clayton Yates, J Bart Rose, Changde Cheng, Smita Bhatia.
Submitted.
2024-12-04
№ 4. Paricalcitol and Hydroxychloroquine modulate extracellular matrix and enhance chemotherapy efficacy in pancreatic cancer.
Dhana Sekhar Reddy Bandi, Sujith Sarvesh, Jeremy Foote, Changde Cheng, Mehmet Akce, Ganji Purnachandra Nagaraju, Bassel F. El-Raye.
Submitted.
2024-12-08
№ 5. Antibody deficiency accelerates tumorigenesis in genetically engineered mouse models of pancreatic cancer.
Foote JB \(^{\dagger}\), Sarvesh S, Al Diffalha S, Crossman DK, Changde Cheng, Kim M, Rose BJ, Klug CA.
Submitted.
2025 (-9)
2025-03-10
№ 10. Marrow Minded: Characterizing Differences between Calvarium and Femur Bone Marrow Microenvironment in Diabetes.
Ashley Rennhack, Micheli Sielski, Bright Asare-Bediako, , Emory Johnson, Fadeela Sheini, Sergio Li Calzi, Changde Cheng, Maria B. Grant.
Submitted.
2025-05-20
№ 11. Induction of a Renal Developmental Cell State is Associated with Chemotherapy Resistance in Favorable-Histology Wilms Tumor.
Andrew M. Fleming; Carolyn M. Jablonowski; Hongjian Jin; Surbhi Sona; Ha Won Lee; Karissa M. Dieseldorff Jones; Changde Cheng; Beisi Xu; Christopher L. Morton; Mary A. Woolard; Prahalathan Pichavaram; Daniel B. Gehle; Sivaraman Natarajan; Kiran Kodali; Vishwajeeth Pagala; Anthony A. High; Yogesh Kumar; Ti-Cheng Chang; John Easton; Scott R. Olsen; Geoffrey Neale; Emilia M. Pinto; Jerold E. Rehg; Teresa Santiago; Rani E. George; Xiaotu Ma; Gerard P. Zambetti; Andrew M. Davidoff; Taosheng Chen; Gang Wu; Xiang Chen; Jun Yang; Andrew Jackson Murphy
Submitted.
2025-06-30
№ 12. Reactive Astrocytes as Drivers of Glioblastoma Progression: The Modulatory Role of Glioma-Derived Extracellular Matrix.
Melika Razavi Hashemi, Dilani Patel, Reid Hale, Burt Nabors, James Markers, Chirstopher Willey, Changde Cheng, Andrea Comba.
Submitted.
2025-07-08
№ 13. Tyrosine kinase inhibition alters macrophage polarization in chronic myeloid leukemia to regulate leukemic stem cell potential.
Tiffany Ricketts, Na Xie, Mason Harris, Ashley Rennhack, Aanya Kadakia, Andrew Paterson, Changde Cheng, Ravi Bhatia
Submitted.
2025-07-11
№ 14. Validation of Adversity-Linked Genes in Pancreatic Neuroendocrine Tumors.
Mourad Bendjennat, Rachael Guenter, Brendon Herring, Elquis Castillo II, Stuart Phipps, Theo Hines, Doug Welsch, Changde Cheng\(^{\dagger}\), Dai Chen, Isra Elhussin, Upender Manne, Herbert Chen, Clayton Yates, Smita Bhatia, J Bart Rose, Andrea Gillis .
Submitted.
2025-07-12
№ 15. A Perturb-seq Map of a Differentiation Hub Reveals Synergistic Vulnerabilities in KMT2A-rearranged AML.
Sajesan Aryal, Brittany M. Curtiss, Xinyue Zhou, Rui Lu\(^{\dagger}\), Changde Cheng\(^{\dagger}\).
Submitted.
2025-07-19
№ 16. Evolution of Clonal Hematopoiesis Following Autologous Transplantation for Lymphoma and Subsequent Therapy-related Myeloid Neoplasia.
Changde Cheng\(^{\ast}\),Rashi Kalra\(^{\ast}\), Yanjun Chen, Alysia Bosworth, Joshua Richman, Na Xie, Chengcheng Yan, Christopher J Gibson, David K Crossman, Lindsey Hageman, Purnima Singh, Melissa A Richards, Benjamin L Ebert, Saro H Armenian, Stephen J Forman, Smita Bhatia\(^{\dagger}\), Ravi Bhatia\(^{\dagger}\)
Submitted.
2025-08-04
№ 18. Sepsis-like Phenotype In Out-of-hospital Cardiac Arrest Is Linked To CD14+ Monocyte Subtypes.
Ana Villasenor-Altamirano, Jiani Chen, Hee Su Sohn, Kohei Yamada, Jai Menon, Changde Cheng, Louis T. Merriam, Edy Y. Kim
Submitted.
2025-08-05
№ 19. Multimodal Single Cell Analysis of Patient Bone Marrow Reveals Genetic Targets and Signaling Pathways Associated with Recurrent Chronic Myeloid Leukemia after Treatment Free Remission Attempt.
Tyler Freeland, Na Xie, Soo-Hyun Kim, Changde Cheng, Dong-wook Kim, Ravi Bhatia
Submitted.
\({\ast}\): First authors
\({\dagger}\): Corresponding author(s)
\({\ddagger}\): Senior authors
Lab member